PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006442t1
Common NameTCM_006442
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 272aa    MW: 31680.2 Da    PI: 9.6182
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006442t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.62.1e-20185678
          trihelix  6 evlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78
                      +v++Li++++++ee  ++++           ++ ++W+ vsk+m +rg+++sp+qC++k+++lnkryk++++  +++ ++++ ++
  Thecc1EG006442t1  1 MVKLLINVVSYVEEGASSDCmggvrrkqfmlQRIGKWKCVSKVMVKRGYHVSPQQCEDKFNDLNKRYKRCNDFLGRGtSCKVAEN 85
                      699**************99889999999999********************************************9944666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-15184No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVKLLINVVS YVEEGASSDC MGGVRRKQFM LQRIGKWKCV SKVMVKRGYH VSPQQCEDKF  60
NDLNKRYKRC NDFLGRGTSC KVAENSELLD TKYLSDKAKE EVKKILSSKN LFNEEMCSYH  120
KGNRLHLPHD PEVQRSSHLP LRCRDNKEPN QSRQNKSDDD CDKGQQGAGA DDQIEETGDN  180
GGTPRFSELS LKSKSDGLQE QWMAFRLLQL KEQKLYIQVQ KLELEKQRSK WQRVNWYNNR  240
NLDKMRLENQ CMKFENKCLA FELKRKKISS V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007041597.10.0Sequence-specific DNA binding transcription factors, putative
TrEMBLA0A061E5770.0A0A061E577_THECC; Sequence-specific DNA binding transcription factors, putative
STRINGPOPTR_0002s06930.12e-93(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2820933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-81sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]